These delicious keto lemon muffins have a tender lemon muffin base, with a crunchy streusel topping and a sweet and tart lemon glaze – it’s everything you’ve ever wanted a in a keto muffin recipe! With 8g protein per muffin, these are great for breakfast, a snack, or even dessert…

This keto lemon muffins recipe post has been updated since I created it back when we were living on an island in Belize. We are back in New York now after 5 years in Central America – but I still remember how excited I was to get lemons in a country that didn’t seem to know they existed! This gluten free lemon muffin recipe is one of my most popular recipes on Pinterest, Instagram, AND Facebook – so be sure to try them out and let us know what you think!
As most of you know by now, I live on an island in Belize where the weather is perpetually summer-like. The temperatures here range from HOT most of the year, to spontaneous combustion is imminent if you’re outside more than 5 minutes in August.
So it’s not easy for me to get in the mindset of “yay, Spring!” like it used to be when I lived in New York and froze half the year. Still, I got very excited when out of the blue, lemons showed up on the island about a month ago.
They don’t have yellow lemons here usually – it’s all limes all the time in Belize. Which I’m OK with for the most part. But this time of year still means lemon flavored everything to me – so I bought a huge bag of them.
I was amused by the cashier’s obvious confusion – first at the weird yellow limes, and second that I was buying at least 20 of them! ? I couldn’t wait to get started cooking lemon flavored everything – the only problem was that I was leaving for the states for 3 weeks and had no time to use them before they went bad…
So I froze my lemons out of desperation, which I’d never done before. ❄️

I was terrified that they’d be ruined when I got home from our trip – but it worked great! As an added bonus, when I thawed and cut them in half to juice them with my hand-held citrus crusher thingy, it was easy to get every last drop out of them – much more so then when they were fresh.
The moral of this story is that if you have more lemons then you can use – you can totally freeze them whole and thaw them as needed! I even zested them for my grated lemon zest with no problems!
So, long story long – against all odds I was able to get lemons in Belize and I made you these keto lemon muffins with them. And THEY TASTE GOOD. SO. GOOD.
There is lemon juice and/or lemon zest added to every component, so it’s sooooooper lemony people – in the best possible way.
Lemon lovers rejoice!

Basic Recipe Steps
Don’t be intimidated by the multiple layers in these keto lemon muffins, they are very easy to make I promise! The muffin batter is made in the blender, with the wet ingredients and dry ingredients being all thrown in there together and blended until smooth – no need to fold or cream or mix in a stand mixer.
The streusel topping you simply stir together with a fork in a bowl until crumbs form, then sprinkle over the batter in the muffin cups before baking.
Finally, the easy lemon glaze is made by using a whisk or fork to blend the erythritol and lemon juice together until smooth – which literally takes seconds to do. Then you simply drizzle it over the top of each muffin (after baking) and you are ready to go!
Why is there sour cream in this keto muffin recipe?
It’s an honest question. I wasn’t sure about it myself, but I used to order an amazing lemon sour cream pound cake years ago, and it was so very tasty that I thought I’d try it in these keto lemon muffins.
The sour cream made the muffins very tender, super rich, and the tart cream flavor really complemented the lemon. I’m hooked, and you will be too!

Can I make this recipe in a loaf pan instead?
I made these both as muffins and as mini loaves, to see if it would bake up ok both ways. It totally did, and I’m on the fence about which way I liked it more. Both tasted the same, but I liked being able to just slice off a small piece of the loaf without committing to an entire muffin.
That being said, my keto muffins were pretty large – so if you make them average sized then you’ll probably be getting about the same amount either way.
The point is – you can make these keto lemon sour cream muffins in almost any format and they will be great. I’m including baking times for multiple sizes in the instructions, but please be aware that ovens and cooking times may vary. Bake it until a toothpick inserted comes out clean and you’ll be in business.
If using a muffin tin, then I definitely recommend using muffin liners so that they don’t stick to the pan – even a non-stick muffin pan isn’t always a guarantee that they won’t stick. If baking in a loaf or cake pan, make sure to line the pan with parchment paper for the same reason. This will ensure that you get them out without sticking.

Can these lemon muffins be made dairy-free?
Yes, you can replace the butter with coconut oil and the sour cream in these keto muffins with 1/2 cup of unsweetened almond milk. The resulting muffin won’t be quite as rich, but the recipe will still work. If you find that your muffin batter is very wet, you can another tablespoon of coconut flour to help dry it out.
What is the best sweetener for these keto muffins?
I prefer to use granulated erythritol in the batter, and confectioners style erythritol in the glaze of these muffins. You can also use a monk fruit sweetener like Lakanto in these with excellent results. I have an allergy to stevia so I don’t use it anymore, but if you have a brand that you like and you don’t mind the flavor then that will also work.
Any of these sweeteners will keep your carbs per serving down, and the net carb count shouldn’t be affected by switching them up.
More Low Carb Muffin Recipes
So glad you asked, why yes I do have more low carb muffin recipes – both sweet and savory, with more being developed as we speak!
- Keto Zucchini Muffins (chocolate with mocha frosting – yum!)
- Keto Blueberry Muffins
- Keto Pumpkin Spicy Monkey Bread Muffins
- Keto Cheesy Herb Muffins
- Keto Cheddar & Jalapeño Cauliflower Muffins
Keto Lemon Muffins – Low Carb and Gluten-free
- Total Time: 40 minutes
- Yield: 8 to 12 servings 1x
- Diet: Gluten Free
Description
Keto lemon muffins with a tender lemon cake layer, topped with crunchy streusel and a sweet tart lemon glaze! Keto, low carb, Atkins friendly, and gluten free
Ingredients
For the muffin:
- 1/2 cup butter, softened
- 3/4 cup granulated erythritol sweetener
- 3 large eggs
- 3 tablespoons lemon juice
- 1 tablespoon lemon zest
- 1 1/2 cup superfine almond flour
- 1/2 cup coconut flour
- 2 teaspoons baking powder
- 1/4 teaspoon xanthan gum or arrowroot powder
- 1/2 teaspoon vanilla extract
- 1 cup full fat sour cream (or 1/2 cup unsweetened almond milk)
- pinch of salt
For the streusel topping:
- 3 tablespoons butter, melted
- 3/4 cup superfine almond flour
- 3 tablespoons granulated erythritol sweetener
- 1 teaspoon grated lemon zest
- 1 tablespoon coconut flour
For the lemon glaze:
- 1/2 cup confectioners style erythritol sweetener
- 3 tablespoons lemon juice
Instructions
For the muffin layer:
- Combine all of the muffin ingredients in a blender and blend for 2-3 minutes or until smooth. The mixture is thick so you’ll have to stop a few times and scrape the sides down with a silicone spatula to get it going the first minute or so.
- Preheat the oven to 350 degrees (F) and then start your streusel topping.
For the streusel topping:
- Combine the melted butter, almond flour, sweetener, lemon zest and coconut flour in a small bowl and stir well with a fork until a crumbly dough forms.
- Spoon the muffin batter from the blender into 8 large or 12 regular muffin cups (if you’re using foil or thin paper then place inside a muffin tin to support them) – or into a small loaf or cake pan.
- Crumble the streusel topping in pea sized pieces over the top of the batter.
- Bake on the middle rack of your oven at 350 degrees for 35 minutes (large muffins) or 25 minutes (average sized muffin) or 50 minutes (loaf or cake pan) OR until a toothpick or knife inserted in the center comes out clean.
For the lemon glaze:
- Combine the erythritol and lemon juice in a cup or small bowl. Stir with a fork until smooth.
- If too runny, add another tablespoon of erythritol (or more) until an opaque but still pourable glaze forms.
- If too stiff to pour, add another teaspoon of lemon juice to loosen.
- Pour the glaze over the muffins after they are baked and slightly cool. Serve warm or room temperature.
- Store any leftovers covered in the refrigerator for up to a week.
Notes
** For best results, see what brands I use and recommend for my recipes over on the IBIH pantry recommendations page!
Approximate nutrition info is as follows:
1 average muffin (1/12th of recipe) or loaf slice contains:
290 calories, 25g fat, 4.5g net carbs, 8g protein
1 gargantuan (bakery sized) muffin or 1/8th of recipe contains:
435 calories, 37g fat, 7g net carbs, 12g protein
- Prep Time: 15 minutes
- Cook Time: 25 minutes
- Category: keto Muffin Recipe
- Method: baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 290
- Fat: 25g
- Carbohydrates: 4.5g net
- Protein: 8g
If you love lemon desserts like I do – you should also try my low carb Lemon Cloud Pie from last season! It’s a stunner for sure! Oh and my favorite keto lemon bars are pretty awesome too – just sayin’.
Can’t get enough delicious low carb recipes? Download all five of my e-cookbooks (over 150 delicious low carb recipes) for just $19.99 for a limited time!

Katrina says
Love these muffins! I was out of vanilla so I used lemon extract, and I left off the streusel because I was short on almond flour… I hunted for this recipe after having a keto lemon muffin at a local bakeshop… these are even better! Thank you so much!
Note: they also freeze beautifully!
Catherine Burke says
I loved these. I made them in 6, 2 cup oven safe “ramekins” made by Anchor Hocking. As the nutritional information listed is for 12 muffins, 1/2 of one of these is a serving. I have tried several keto friendly recipes from other sites and I find that I keep coming back here. Everything I’ve made has come out perfectly and tastes amazing. Thank you!
MOONYEAN C LEFEVRE says
Since your Herb Cheddar Muffins are such a hit at my house I’m going to try this one next…working on how to figure out to change from lemon to another flavor as I have an allergy to lemon’s and oranges…I’m thinking raspberry or blueberry…hummm but if they are as moist as the Herb Cheddar Muffin I’M IN!!!
Krista says
Where is the link to these I can’t find them!
Kate says
These muffins are SO good! They’re perfect for breakfast during the week; I can just grab one and eat it on the go. I will say that I definitely don’t recommend using a blender unless you have a fancy Ninja or something really powerful. A regular old blender didn’t cut it for me.
Carie says
I had the same problem! I’m debating between food processor and my KitchenAid. Never again with the blender #biggestbakingmessever
Jessica says
I’m so making these tomorrow. I have Splenda, will that work as a substitute? If so would the ratio be the same?
Also, FYI…I have a home in California and a home on the east coast too. I have a beautiful Meyer lemon tree in California that produces the most delicious lemons year-round. Whenever I go back I fill a suitcase with lemons to bring back with me. (TSA must think I’m nuts?, that bag gets hand inspected every time)
Anyway, I zest them and freeze the zest in baggies, juice them and freeze the juice in ice cube trays then put the cubes in large baggies…it works great and I ALWAYS have both on hand.?
Cheryl says
Just made this tonight I have to say they are so yummy! I made 12 large muffins! Thanks again!
Dana says
We made these twice and both times my hubby and I felt sick(upset stomach, headache) afterwards…. wondering if the lemon curdled the sour cream? Neither of us have sensitivities or allergies… Wondering why this happened to us both, both times. Anyone else have an issue with these muffins? Super tasty, but…
Maggie says
I havent made these yet, but maybe it is the artificial sweetener. It makes me sick to my stomach and gives me a terrible headache. Maybe it is the same for you. .
Lori Lymburner says
erythritol in large amounts can cause gastric distress in some people, try monk fruit instead it doesn’t upset your stomach
Kristin says
Has anyone tried Stevia?
Carie says
I don’t like straight stevia for baking because it comes out bitter tasting to me, but often, I will half and half the stevia and erythritol. They seem to cancel out each other’s negative characteristics. I can’t stand the cooling aftertaste of erythritol.
Cindy says
I made 24 mini muffins and 6 normal size muffins with the batter. I just did the glaze on them without the streusel and they are yummy!! A couple of my big ones turned a little crumbly but still good to eat with a fork ?
Patti says
Hi again,
I just made the muffins but I did something wrong. Mine were falling apart. I did use super fine almond flour. My batter wasn’t as thick as you had said it should be. So I definitely did something wrong.
In my previously reply I said I did t see what temp to cook the recipe in the bread pan but I found it. I knew I had seen it but somehow I over looked it. I went over all the ingredients and I pur everything in that it said so help please. They are still delicious. I usually don’t have any trouble with any of your recipes but this time I messed up lol.
Thanks so much
Patti says
Hi,
I love this recipe and all your recipes. I must have missed the part that said how long to bake if you use a small bread pan and what temp do you bake it at.
I was also,thinking of doubling the recipe and using a regular bread pan. Can you tell me what temp and how long to bake this at.?
Thanks so much for so many great recipes.