These delicious keto lemon muffins have a tender lemon muffin base, with a crunchy streusel topping and a sweet and tart lemon glaze – it’s everything you’ve ever wanted a in a keto muffin recipe! With 8g protein per muffin, these are great for breakfast, a snack, or even dessert…

This keto lemon muffins recipe post has been updated since I created it back when we were living on an island in Belize. We are back in New York now after 5 years in Central America – but I still remember how excited I was to get lemons in a country that didn’t seem to know they existed! This gluten free lemon muffin recipe is one of my most popular recipes on Pinterest, Instagram, AND Facebook – so be sure to try them out and let us know what you think!
As most of you know by now, I live on an island in Belize where the weather is perpetually summer-like. The temperatures here range from HOT most of the year, to spontaneous combustion is imminent if you’re outside more than 5 minutes in August.
So it’s not easy for me to get in the mindset of “yay, Spring!” like it used to be when I lived in New York and froze half the year. Still, I got very excited when out of the blue, lemons showed up on the island about a month ago.
They don’t have yellow lemons here usually – it’s all limes all the time in Belize. Which I’m OK with for the most part. But this time of year still means lemon flavored everything to me – so I bought a huge bag of them.
I was amused by the cashier’s obvious confusion – first at the weird yellow limes, and second that I was buying at least 20 of them! ? I couldn’t wait to get started cooking lemon flavored everything – the only problem was that I was leaving for the states for 3 weeks and had no time to use them before they went bad…
So I froze my lemons out of desperation, which I’d never done before. ❄️

I was terrified that they’d be ruined when I got home from our trip – but it worked great! As an added bonus, when I thawed and cut them in half to juice them with my hand-held citrus crusher thingy, it was easy to get every last drop out of them – much more so then when they were fresh.
The moral of this story is that if you have more lemons then you can use – you can totally freeze them whole and thaw them as needed! I even zested them for my grated lemon zest with no problems!
So, long story long – against all odds I was able to get lemons in Belize and I made you these keto lemon muffins with them. And THEY TASTE GOOD. SO. GOOD.
There is lemon juice and/or lemon zest added to every component, so it’s sooooooper lemony people – in the best possible way.
Lemon lovers rejoice!

Basic Recipe Steps
Don’t be intimidated by the multiple layers in these keto lemon muffins, they are very easy to make I promise! The muffin batter is made in the blender, with the wet ingredients and dry ingredients being all thrown in there together and blended until smooth – no need to fold or cream or mix in a stand mixer.
The streusel topping you simply stir together with a fork in a bowl until crumbs form, then sprinkle over the batter in the muffin cups before baking.
Finally, the easy lemon glaze is made by using a whisk or fork to blend the erythritol and lemon juice together until smooth – which literally takes seconds to do. Then you simply drizzle it over the top of each muffin (after baking) and you are ready to go!
Why is there sour cream in this keto muffin recipe?
It’s an honest question. I wasn’t sure about it myself, but I used to order an amazing lemon sour cream pound cake years ago, and it was so very tasty that I thought I’d try it in these keto lemon muffins.
The sour cream made the muffins very tender, super rich, and the tart cream flavor really complemented the lemon. I’m hooked, and you will be too!

Can I make this recipe in a loaf pan instead?
I made these both as muffins and as mini loaves, to see if it would bake up ok both ways. It totally did, and I’m on the fence about which way I liked it more. Both tasted the same, but I liked being able to just slice off a small piece of the loaf without committing to an entire muffin.
That being said, my keto muffins were pretty large – so if you make them average sized then you’ll probably be getting about the same amount either way.
The point is – you can make these keto lemon sour cream muffins in almost any format and they will be great. I’m including baking times for multiple sizes in the instructions, but please be aware that ovens and cooking times may vary. Bake it until a toothpick inserted comes out clean and you’ll be in business.
If using a muffin tin, then I definitely recommend using muffin liners so that they don’t stick to the pan – even a non-stick muffin pan isn’t always a guarantee that they won’t stick. If baking in a loaf or cake pan, make sure to line the pan with parchment paper for the same reason. This will ensure that you get them out without sticking.

Can these lemon muffins be made dairy-free?
Yes, you can replace the butter with coconut oil and the sour cream in these keto muffins with 1/2 cup of unsweetened almond milk. The resulting muffin won’t be quite as rich, but the recipe will still work. If you find that your muffin batter is very wet, you can another tablespoon of coconut flour to help dry it out.
What is the best sweetener for these keto muffins?
I prefer to use granulated erythritol in the batter, and confectioners style erythritol in the glaze of these muffins. You can also use a monk fruit sweetener like Lakanto in these with excellent results. I have an allergy to stevia so I don’t use it anymore, but if you have a brand that you like and you don’t mind the flavor then that will also work.
Any of these sweeteners will keep your carbs per serving down, and the net carb count shouldn’t be affected by switching them up.
More Low Carb Muffin Recipes
So glad you asked, why yes I do have more low carb muffin recipes – both sweet and savory, with more being developed as we speak!
- Keto Zucchini Muffins (chocolate with mocha frosting – yum!)
- Keto Blueberry Muffins
- Keto Pumpkin Spicy Monkey Bread Muffins
- Keto Cheesy Herb Muffins
- Keto Cheddar & Jalapeño Cauliflower Muffins
Keto Lemon Muffins – Low Carb and Gluten-free
- Total Time: 40 minutes
- Yield: 8 to 12 servings 1x
- Diet: Gluten Free
Description
Keto lemon muffins with a tender lemon cake layer, topped with crunchy streusel and a sweet tart lemon glaze! Keto, low carb, Atkins friendly, and gluten free
Ingredients
For the muffin:
- 1/2 cup butter, softened
- 3/4 cup granulated erythritol sweetener
- 3 large eggs
- 3 tablespoons lemon juice
- 1 tablespoon lemon zest
- 1 1/2 cup superfine almond flour
- 1/2 cup coconut flour
- 2 teaspoons baking powder
- 1/4 teaspoon xanthan gum or arrowroot powder
- 1/2 teaspoon vanilla extract
- 1 cup full fat sour cream (or 1/2 cup unsweetened almond milk)
- pinch of salt
For the streusel topping:
- 3 tablespoons butter, melted
- 3/4 cup superfine almond flour
- 3 tablespoons granulated erythritol sweetener
- 1 teaspoon grated lemon zest
- 1 tablespoon coconut flour
For the lemon glaze:
- 1/2 cup confectioners style erythritol sweetener
- 3 tablespoons lemon juice
Instructions
For the muffin layer:
- Combine all of the muffin ingredients in a blender and blend for 2-3 minutes or until smooth. The mixture is thick so you’ll have to stop a few times and scrape the sides down with a silicone spatula to get it going the first minute or so.
- Preheat the oven to 350 degrees (F) and then start your streusel topping.
For the streusel topping:
- Combine the melted butter, almond flour, sweetener, lemon zest and coconut flour in a small bowl and stir well with a fork until a crumbly dough forms.
- Spoon the muffin batter from the blender into 8 large or 12 regular muffin cups (if you’re using foil or thin paper then place inside a muffin tin to support them) – or into a small loaf or cake pan.
- Crumble the streusel topping in pea sized pieces over the top of the batter.
- Bake on the middle rack of your oven at 350 degrees for 35 minutes (large muffins) or 25 minutes (average sized muffin) or 50 minutes (loaf or cake pan) OR until a toothpick or knife inserted in the center comes out clean.
For the lemon glaze:
- Combine the erythritol and lemon juice in a cup or small bowl. Stir with a fork until smooth.
- If too runny, add another tablespoon of erythritol (or more) until an opaque but still pourable glaze forms.
- If too stiff to pour, add another teaspoon of lemon juice to loosen.
- Pour the glaze over the muffins after they are baked and slightly cool. Serve warm or room temperature.
- Store any leftovers covered in the refrigerator for up to a week.
Notes
** For best results, see what brands I use and recommend for my recipes over on the IBIH pantry recommendations page!
Approximate nutrition info is as follows:
1 average muffin (1/12th of recipe) or loaf slice contains:
290 calories, 25g fat, 4.5g net carbs, 8g protein
1 gargantuan (bakery sized) muffin or 1/8th of recipe contains:
435 calories, 37g fat, 7g net carbs, 12g protein
- Prep Time: 15 minutes
- Cook Time: 25 minutes
- Category: keto Muffin Recipe
- Method: baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 290
- Fat: 25g
- Carbohydrates: 4.5g net
- Protein: 8g
If you love lemon desserts like I do – you should also try my low carb Lemon Cloud Pie from last season! It’s a stunner for sure! Oh and my favorite keto lemon bars are pretty awesome too – just sayin’.
Can’t get enough delicious low carb recipes? Download all five of my e-cookbooks (over 150 delicious low carb recipes) for just $19.99 for a limited time!

Mellissa Sevigny says
If anything these are on the moist side, it’s got to be your coconut or almond flour brand or something. That definitely does not make any sense. Are you accidentally switching the quantities of coconut and almond flour? Maybe putting mostly coconut flour in? Because that would account for dryness since coconut flour is highly absorbent.
Carol says
I love these! So amazing and agree with you they are super moist. I found an error in the conversion from US measurement to metric, and it doubled my coconut flour. You don’t have to post this but I wanted to let you know so that you could correct this.
Robyn Harrelson says
I used Pam
in the tin and they still crumble apart when I take them out?..
Mellissa Sevigny says
These work best in muffin cup liners.
Carol says
I have made this recipe several times and love it! This was my favorite go to for a long time but have recently discovered I have an egg allergy. Can you suggest what egg replacement would work best for this recipe?
Cindy says
Can I sub Greek yogurt for sour cream?
Mellissa Sevigny says
Yes, but it will alter the carb count.
Jessica says
I love lemon anything and these are wonderful!! Perfect for spring and summer and the sour cream makes it!
Karen says
So, I have gotten to the point in life where I don’t bake much, but when I read this, I had to try it! I have made them twice…
First, the good: they are delicious! We love lemon anything & these are just what we love.
Next, the not so great: I have read the recipe at least a dozen times & don’t see anything about either using muffin papers or greasing the muffin tin. The first time I made them, I sprayed the muffin tin with a Pam type product. They were very difficult to get out of the pan :-(
The second time I used muffin papers & they came out without any problem.
As I said, I rarely bake anymore, so maybe it’s just because of that… Maybe I should have just known to use muffin papers!
Bottom line: We love them! Also, one more note, my muffin tins are “standard”, I had enough batter to make 12 muffins plus 1 extra in as custard cup…
Keep up the great recipes!
Janet says
One of the best Keto recipes that I’ve tasted and made! I find Keto recipes with sour cream are some of the most moist!! Love these!!
MARGARET KELLAWAY says
Amazing muffins with great flavour. Moist and delicious. I didn’t use baking cups and they fell apart coming out of the muffin pan. Any suggestions?
Christie says
Made the batter in my food processor because I don’t have a blender, and it worked very well. Didn’t have to scrape the sides at all. The muffins turned out yummy. Thank you for a great recipe!
Cindy L says
These are hands down with best Keto muffins I’ve made in years! The sour cream and lemon flavor make them shine. Thank you! I use birch xylitol for the sweetener and my silicone mini-muffin molds. It yielded 40 mini muffins which helps with portion control and calorie count.